Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | H9N25_16845 | Not Available | Negative | 4105922 - 4108369 | 90333.8 |
| tonb-dependent receptor | H9N25_16850 | Not Available | Negative | 4108507 - 4110960 | 91637.8 |
| pspc domain-containing protein | H9N25_16855 | P0AFN4 | Negative | 4111130 - 4112872 | 66376.6 |
| padr family transcriptional regulator | H9N25_16860 | C0H3Y4 | Negative | 4112890 - 4113225 | 12401.9 |
| amino acid permease | H9N25_16865 | O07576 | Positive | 4113765 - 4115213 | 51784.7 |
| hypothetical protein | H9N25_16870 | Not Available | Positive | 4115427 - 4115591 | 6039.66 |
| nad(p)/fad-dependent oxidoreductase | H9N25_16875 | Q2UPB5 | Negative | 4115607 - 4116503 | 32705.4 |
| class i sam-dependent methyltransferase | H9N25_16880 | Not Available | Negative | 4116578 - 4117204 | 24529.0 |
| hypothetical protein | H9N25_16885 | Not Available | Negative | 4117289 - 4118200 | 35065.1 |
| voc family protein | H9N25_16890 | Not Available | Positive | 4118356 - 4118772 | 15795.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

