Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhomboid family intramembrane serine protease | H9N25_16695 | Not Available | Positive | 4064909 - 4065763 | 31404.0 |
| endonuclease/exonuclease/phosphatase family protein | H9N25_16700 | Not Available | Positive | 4065763 - 4066875 | 42071.4 |
| nitroreductase family protein | H9N25_16705 | P46072 | Positive | 4067684 - 4068316 | 23085.8 |
| carboxypeptidase regulatory-like domain-containing protein | H9N25_16710 | Not Available | Positive | 4068902 - 4071547 | 97442.0 |
| d-glycerate dehydrogenase | H9N25_16715 | Q9C4M5 | Negative | 4071872 - 4072831 | 34872.6 |
| duf4249 domain-containing protein | H9N25_16720 | Not Available | Negative | 4072894 - 4073703 | 30244.7 |
| tonb-dependent receptor | H9N25_16725 | Not Available | Negative | 4073708 - 4076032 | 86929.3 |
| hypothetical protein | H9N25_16730 | Not Available | Negative | 4076129 - 4077328 | 44632.3 |
| cellulase family glycosylhydrolase | H9N25_16735 | W8QRE4 | Negative | 4077345 - 4079096 | 66616.4 |
| glucosylceramidase | H9N25_16740 | Q4WBR2 | Negative | 4079115 - 4080512 | 51156.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

