Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| malate:quinone oxidoreductase | H9N25_16645 | A5FGX2 | Negative | 4051373 - 4052890 | 56132.6 |
| short-chain dehydrogenase | H9N25_16650 | Not Available | Positive | 4053275 - 4054576 | 49886.1 |
| voc family protein | H9N25_16655 | Not Available | Negative | 4054668 - 4055021 | 13037.5 |
| peptide-methionine (s)-s-oxide reductase msra | H9N25_16660 | Q97Y45 | Negative | 4055095 - 4055694 | 22434.0 |
| isopenicillin n synthase family oxygenase | H9N25_16665 | A0A411L030 | Positive | 4056050 - 4057012 | 36067.7 |
| hypothetical protein | H9N25_16670 | Not Available | Positive | 4057109 - 4057951 | 31639.0 |
| serine hydrolase | H9N25_16675 | P77619 | Negative | 4058233 - 4060050 | 67557.6 |
| amidohydrolase | H9N25_16680 | A0A1I9LN01 | Negative | 4060037 - 4061671 | 60882.9 |
| dna mismatch repair endonuclease mutl | H9N25_16685 | Q11Z58 | Positive | 4062261 - 4064096 | 68382.6 |
| doxx family membrane protein | H9N25_16690 | P53259 | Positive | 4064204 - 4064916 | 27063.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

