Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m1 family metallopeptidase | H9N25_16595 | Q8VZH2 | Negative | 4037247 - 4039232 | 74291.0 |
| carboxypeptidase-like regulatory domain-containing protein | H9N25_16600 | Not Available | Negative | 4039348 - 4040088 | 28072.0 |
| spx/mgsr family rna polymerase-binding regulatory protein | H9N25_16605 | P24178 | Negative | 4040157 - 4040504 | 13409.0 |
| histidine kinase | H9N25_16610 | P94586 | Positive | 4040965 - 4042329 | 52951.4 |
| response regulator transcription factor | H9N25_16615 | P0AE40 | Positive | 4042367 - 4043041 | 25586.1 |
| carboxypeptidase-like regulatory domain-containing protein | H9N25_16620 | T2KM18 | Negative | 4043244 - 4046681 | 130046.0 |
| hypothetical protein | H9N25_16625 | Not Available | Negative | 4046876 - 4047634 | 28868.9 |
| hypothetical protein | H9N25_16630 | Not Available | Negative | 4047715 - 4049598 | 72609.6 |
| 6,7-dimethyl-8-ribityllumazine synthase | H9N25_16635 | Q11NR0 | Positive | 4049761 - 4050252 | 17215.6 |
| bacillithiol system redox-active protein ytxj | H9N25_16640 | P39914 | Positive | 4050520 - 4050852 | 12351.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

