Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l2 | H9N25_16445 | A6LEI8 | Negative | 4009978 - 4010802 | 29898.3 |
| 50s ribosomal protein l23 | H9N25_16450 | B3QY26 | Negative | 4010823 - 4011113 | 10642.1 |
| 50s ribosomal protein l4 | H9N25_16455 | A6LEJ0 | Negative | 4011115 - 4011744 | 22936.6 |
| 50s ribosomal protein l3 | H9N25_16460 | Q5L8A9 | Negative | 4011749 - 4012366 | 21925.4 |
| duf1634 domain-containing protein | H9N25_16465 | Not Available | Negative | 4012539 - 4012934 | 14320.1 |
| sulfite exporter taue/safe family protein | H9N25_16470 | O32134 | Negative | 4012934 - 4013767 | 28829.5 |
| doxx family membrane protein | H9N25_16475 | P20049 | Negative | 4013894 - 4015149 | 46485.9 |
| hypothetical protein | H9N25_16480 | Not Available | Positive | 4015320 - 4015931 | 23062.9 |
| dntp triphosphohydrolase | H9N25_16485 | B7UXM6 | Negative | 4016207 - 4017550 | 50952.8 |
| hypothetical protein | H9N25_16490 | Not Available | Positive | 4017694 - 4018056 | 12859.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

