Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l36 | H9N25_16345 | B2RLW9 | Negative | 4000622 - 4000738 | 4548.8 |
| translation initiation factor if-1 | H9N25_16350 | Q5L8D1 | Negative | 4000740 - 4000958 | 8322.27 |
| doxx family membrane protein | H9N25_16355 | P50614 | Negative | 4001030 - 4001814 | 28335.1 |
| doxx family membrane protein | H9N25_16360 | Q59916 | Negative | 4001823 - 4003162 | 49223.2 |
| 50s ribosomal protein l15 | H9N25_16365 | A5FN02 | Negative | 4003170 - 4003616 | 15453.8 |
| 50s ribosomal protein l30 | H9N25_16370 | Q11QD0 | Negative | 4003721 - 4003900 | 6586.27 |
| 30s ribosomal protein s5 | H9N25_16375 | Q11QC9 | Negative | 4003905 - 4004423 | 17937.0 |
| 50s ribosomal protein l18 | H9N25_16380 | A5N4R3 | Negative | 4004441 - 4004794 | 12658.3 |
| 50s ribosomal protein l6 | H9N25_16385 | A6LEH6 | Negative | 4004800 - 4005357 | 20120.5 |
| 30s ribosomal protein s8 | H9N25_16390 | Q11QC6 | Negative | 4005376 - 4005774 | 14571.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

