Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1304 domain-containing protein | H9N25_16295 | Q02009 | Positive | 3989520 - 3989879 | 13187.8 |
| sam-dependent methyltransferase | H9N25_16300 | Q6DDT5 | Negative | 3990041 - 3991228 | 44784.1 |
| gmc family oxidoreductase | H9N25_16305 | Q3YAT3 | Positive | 3991474 - 3993210 | 63758.1 |
| gluconate 2-dehydrogenase subunit 3 family protein | H9N25_16310 | O34213 | Positive | 3993222 - 3993854 | 23422.1 |
| doxx family membrane protein | H9N25_16315 | Not Available | Negative | 3993969 - 3996937 | 105913.0 |
| 50s ribosomal protein l17 | H9N25_16320 | A0M572 | Negative | 3997240 - 3997761 | 19332.2 |
| dna-directed rna polymerase subunit alpha | H9N25_16325 | A0M573 | Negative | 3997884 - 3998876 | 37138.9 |
| 30s ribosomal protein s4 | H9N25_16330 | Q8A4A1 | Negative | 3998962 - 3999570 | 22892.5 |
| 30s ribosomal protein s11 | H9N25_16335 | Q11QD6 | Negative | 3999631 - 4000020 | 13786.8 |
| 30s ribosomal protein s13 | H9N25_16340 | Q11QD5 | Negative | 4000175 - 4000552 | 14180.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

