Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m42 family metallopeptidase | H9N25_16195 | Q8TZW4 | Positive | 3969468 - 3970583 | 41638.9 |
| hypothetical protein | H9N25_16200 | Not Available | Positive | 3970583 - 3970837 | 9832.27 |
| 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | H9N25_16205 | Q8R7C8 | Positive | 3970924 - 3971613 | 26873.9 |
| pas domain-containing protein | H9N25_16210 | A6X554 | Positive | 3971795 - 3972196 | 15160.1 |
| exodeoxyribonuclease iii | H9N25_16215 | P44318 | Negative | 3972208 - 3972984 | 29837.6 |
| response regulator | H9N25_16220 | Q55890 | Negative | 3973305 - 3973676 | 13845.9 |
| sigma-70 family rna polymerase sigma factor | H9N25_16225 | Q7AKG9 | Negative | 3973755 - 3974273 | 19947.0 |
| response regulator transcription factor | H9N25_16230 | A7X623 | Negative | 3974399 - 3975049 | 24179.5 |
| pas domain-containing sensor histidine kinase | H9N25_16235 | Q2FY80 | Negative | 3975090 - 3976169 | 40835.6 |
| hypothetical protein | H9N25_16240 | Not Available | Negative | 3976604 - 3977029 | 16658.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

