Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| purine-nucleoside phosphorylase | H9N25_16045 | P46354 | Negative | 3939938 - 3940753 | 30034.7 |
| tetraacyldisaccharide 4'-kinase | H9N25_16050 | Q8A6K1 | Negative | 3940725 - 3941786 | 40107.0 |
| fad-dependent monooxygenase | H9N25_16055 | P96800 | Positive | 3942253 - 3943383 | 42289.5 |
| methyltransferase domain-containing protein | H9N25_16060 | Q12K11 | Positive | 3943384 - 3944097 | 26822.7 |
| type iii polyketide synthase | H9N25_16065 | Q7VEV2 | Positive | 3944094 - 3945146 | 38904.2 |
| beta-hydroxyacyl-acp dehydratase | H9N25_16070 | C3MBR1 | Positive | 3945171 - 3945611 | 16259.8 |
| beta-ketoacyl-[acyl-carrier-protein] synthase family protein | H9N25_16075 | P55338 | Positive | 3945604 - 3946884 | 45142.9 |
| acyl carrier protein | H9N25_16080 | P29189 | Positive | 3946881 - 3947144 | 9686.47 |
| 4-phosphopantetheinyl transferase family protein | H9N25_16085 | Not Available | Positive | 3947131 - 3947586 | 17413.8 |
| hypothetical protein | H9N25_16090 | Not Available | Negative | 3947644 - 3948735 | 41026.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

