Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | H9N25_15995 | P28809 | Positive | 3928310 - 3929227 | 35772.3 |
| dna mismatch repair protein muts | H9N25_16000 | O66652 | Negative | 3929331 - 3931148 | 68387.5 |
| hypothetical protein | H9N25_16005 | Not Available | Positive | 3931446 - 3932078 | 23679.1 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | H9N25_16010 | A6LDQ1 | Positive | 3932164 - 3932637 | 18075.0 |
| hypothetical protein | H9N25_16015 | Q54IP0 | Positive | 3932684 - 3934033 | 51044.6 |
| duf5606 domain-containing protein | H9N25_16020 | Not Available | Negative | 3934276 - 3934818 | 19304.2 |
| peptidylprolyl isomerase | H9N25_16025 | P29820 | Negative | 3934965 - 3935426 | 16858.9 |
| asparagine synthetase b | H9N25_16030 | Not Available | Positive | 3935585 - 3936841 | 47568.7 |
| port family protein | H9N25_16035 | Not Available | Positive | 3937125 - 3937865 | 25766.0 |
| putative porin | H9N25_16040 | Not Available | Negative | 3937930 - 3939936 | 76813.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

