Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | H9N25_15945 | Q8G0Y6 | Negative | 3910571 - 3911920 | 49899.6 |
| polysaccharide deacetylase family protein | H9N25_15950 | Q81AF4 | Positive | 3911995 - 3912651 | 25218.5 |
| bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | H9N25_15955 | Q9I2V5 | Positive | 3913139 - 3915904 | 100506.0 |
| aconitate hydratase | H9N25_15960 | P34455 | Positive | 3916097 - 3918376 | 81769.0 |
| duf2007 domain-containing protein | H9N25_15965 | Not Available | Negative | 3919517 - 3919954 | 16135.9 |
| beta-glucosidase | H9N25_15970 | Q08638 | Negative | 3920009 - 3921346 | 50678.5 |
| hypothetical protein | H9N25_15975 | Not Available | Negative | 3921455 - 3922849 | 50866.6 |
| doxx family membrane protein | H9N25_15980 | Not Available | Negative | 3922851 - 3923761 | 33121.9 |
| duf1501 domain-containing protein | H9N25_15985 | Not Available | Negative | 3923873 - 3925381 | 55347.2 |
| duf1549 domain-containing protein | H9N25_15990 | Not Available | Negative | 3925394 - 3928132 | 104138.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

