Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_15845 | Not Available | Negative | 3886268 - 3887644 | 52936.5 |
| atp-binding protein | H9N25_15850 | P14633 | Negative | 3887657 - 3890251 | 98653.0 |
| restriction endonuclease | H9N25_15855 | P14633 | Negative | 3890281 - 3891477 | 45311.1 |
| dna (cytosine-5-)-methyltransferase | H9N25_15860 | P0AEE0 | Negative | 3891486 - 3892733 | 47365.4 |
| dna mismatch endonuclease vsr | H9N25_15865 | Q9JWD6 | Negative | 3892862 - 3893299 | 17030.8 |
| glycoside hydrolase family 130 protein | H9N25_15870 | Q92DF6 | Negative | 3893389 - 3894438 | 38999.7 |
| csbd family protein | H9N25_15875 | Q8FB32 | Negative | 3894503 - 3894688 | 7024.41 |
| tonb-dependent receptor | H9N25_15880 | T2KPJ3 | Positive | 3894889 - 3897891 | 109188.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_15885 | T2KN63 | Positive | 3897912 - 3899282 | 49824.8 |
| doxx family membrane protein | H9N25_15890 | Q6MNF1 | Negative | 3899551 - 3901445 | 71199.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

