Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 92 protein | H9N25_15795 | O86365 | Negative | 3869801 - 3872068 | 86239.9 |
| duf4964 domain-containing protein | H9N25_15800 | Not Available | Negative | 3872116 - 3872274 | 5994.1 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_15805 | Q8A1G2 | Negative | 3872557 - 3874197 | 61182.4 |
| susc/raga family tonb-linked outer membrane protein | H9N25_15810 | T2KPJ3 | Negative | 3874209 - 3877160 | 108094.0 |
| laci family dna-binding transcriptional regulator | H9N25_15815 | Q0I4B4 | Negative | 3877567 - 3878571 | 37571.2 |
| hypothetical protein | H9N25_15820 | Not Available | Negative | 3878942 - 3880111 | 44883.0 |
| lipid-a-disaccharide synthase | H9N25_15825 | Q2LVL8 | Negative | 3880208 - 3881314 | 41516.2 |
| stationary phase survival protein sure | H9N25_15830 | Not Available | Negative | 3881471 - 3881743 | 10184.8 |
| doxx family membrane protein | H9N25_15835 | Q11WK5 | Negative | 3881755 - 3882593 | 30340.0 |
| insulinase family protein | H9N25_15840 | P55679 | Positive | 3882816 - 3885749 | 109546.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

