Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | H9N25_15745 | Not Available | Negative | 3856391 - 3856801 | 15631.0 |
| helix-turn-helix domain-containing protein | H9N25_15750 | A0A0H2ZIC3 | Positive | 3856945 - 3857931 | 37139.9 |
| hypothetical protein | H9N25_15755 | Not Available | Negative | 3858447 - 3858836 | 14802.5 |
| ribose-5-phosphate isomerase rpia | H9N25_15760 | Q1GX07 | Negative | 3859073 - 3859762 | 24300.5 |
| hypothetical protein | H9N25_15765 | P15452 | Negative | 3860759 - 3862720 | 72625.6 |
| duf1080 domain-containing protein | H9N25_15770 | Not Available | Negative | 3862732 - 3864135 | 50740.1 |
| doxx family membrane protein | H9N25_15775 | O86365 | Negative | 3864223 - 3866510 | 85161.8 |
| doxx family membrane protein | H9N25_15780 | Not Available | Negative | 3866551 - 3867223 | 25747.3 |
| secretory protein | H9N25_15785 | Not Available | Negative | 3867402 - 3868385 | 37245.3 |
| rok family protein | H9N25_15790 | Q9X1I0 | Negative | 3868863 - 3869738 | 31594.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

