Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine(55) synthase trub | H9N25_15695 | Q9RB36 | Positive | 3845996 - 3846727 | 27399.9 |
| yitt family protein | H9N25_15700 | P54478 | Positive | 3846724 - 3847584 | 31084.8 |
| bifunctional riboflavin kinase/fad synthetase | H9N25_15705 | P44957 | Positive | 3847597 - 3848592 | 37305.7 |
| cation:proton antiporter | H9N25_15710 | P39830 | Positive | 3849103 - 3851316 | 81630.0 |
| duf2157 domain-containing protein | H9N25_15715 | Not Available | Positive | 3851411 - 3852445 | 39689.4 |
| duf1016 domain-containing protein | H9N25_15720 | P45423 | Positive | 3852518 - 3853603 | 42482.1 |
| yjbq family protein | H9N25_15725 | P0AF49 | Positive | 3853609 - 3854031 | 15980.9 |
| doxx family membrane protein | H9N25_15730 | Q9WYH1 | Negative | 3854115 - 3855433 | 49049.9 |
| doxx family protein | H9N25_15735 | Not Available | Negative | 3855593 - 3855970 | 13872.7 |
| doxx family membrane protein | H9N25_15740 | Not Available | Negative | 3855972 - 3856384 | 15084.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

