Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_15645 | O34739 | Positive | 3830680 - 3830988 | 11754.7 |
| mfs transporter | H9N25_15650 | F1NCD6 | Positive | 3831228 - 3832562 | 48981.1 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_15655 | T2KNB8 | Negative | 3832930 - 3834642 | 62915.3 |
| tonb-dependent receptor | H9N25_15660 | T2KPJ3 | Negative | 3834658 - 3837888 | 116763.0 |
| dead/deah box helicase | H9N25_15665 | P25888 | Positive | 3838456 - 3839754 | 47919.4 |
| leucine--trna ligase | H9N25_15670 | Q11VK7 | Negative | 3840162 - 3842948 | 107122.0 |
| hypothetical protein | H9N25_15675 | Not Available | Negative | 3843277 - 3843705 | 15936.0 |
| cell division protein ftsx | H9N25_15680 | A5FMG4 | Positive | 3843906 - 3844784 | 32713.6 |
| duf3098 domain-containing protein | H9N25_15685 | Not Available | Positive | 3844784 - 3845011 | 8250.58 |
| undecaprenyl-diphosphate phosphatase | H9N25_15690 | A6H239 | Positive | 3845092 - 3845886 | 28926.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

