Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa dehydrogenase | H9N25_15595 | D0C6T7 | Negative | 3811066 - 3812154 | 40333.7 |
| nicotinamide mononucleotide transporter | H9N25_15600 | D2ZZC1 | Negative | 3812185 - 3812805 | 23916.0 |
| dna gyrase/topoisomerase iv subunit a | H9N25_15605 | O51066 | Negative | 3813164 - 3816076 | 109099.0 |
| peptide-n-glycosidase | H9N25_15610 | Not Available | Negative | 3816497 - 3818182 | 61912.7 |
| cytidine deaminase | H9N25_15615 | P19079 | Negative | 3818385 - 3818873 | 17902.5 |
| translocation/assembly module tamb | H9N25_15620 | Not Available | Positive | 3819015 - 3824006 | 183458.0 |
| bama/tama family outer membrane protein | H9N25_15625 | Q9K1H0 | Positive | 3823990 - 3826305 | 87729.8 |
| yihy/virulence factor brkb family protein | H9N25_15630 | A8H9I2 | Positive | 3826313 - 3827344 | 37641.9 |
| type iia dna topoisomerase subunit b | H9N25_15635 | Q59189 | Negative | 3827432 - 3829303 | 70888.5 |
| apc family permease | H9N25_15640 | O34739 | Positive | 3829652 - 3830644 | 35794.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

