Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_15545 | Not Available | Negative | 3803454 - 3804437 | 36583.6 |
| pspc domain-containing protein | H9N25_15550 | O34719 | Negative | 3804443 - 3805138 | 25903.9 |
| sdr family oxidoreductase | H9N25_15555 | Q8CN40 | Negative | 3805158 - 3805847 | 25118.1 |
| abc transporter permease | H9N25_15560 | Q1RGU3 | Positive | 3805994 - 3806728 | 26154.7 |
| atp-binding cassette domain-containing protein | H9N25_15565 | Q1M8E0 | Positive | 3806728 - 3807480 | 28159.0 |
| duf2281 domain-containing protein | H9N25_15570 | Not Available | Positive | 3807502 - 3807747 | 9267.03 |
| type ii toxin-antitoxin system vapc family toxin | H9N25_15575 | Not Available | Positive | 3807747 - 3808130 | 14871.4 |
| class i sam-dependent methyltransferase | H9N25_15580 | Q07ZR3 | Positive | 3808134 - 3809015 | 33316.0 |
| hypothetical protein | H9N25_15585 | Not Available | Positive | 3809113 - 3810162 | 39001.8 |
| peptide-methionine (s)-s-oxide reductase msra | H9N25_15590 | Q97Y45 | Positive | 3810523 - 3811065 | 20532.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

