Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ghkl domain-containing protein | H9N25_15495 | P23545 | Negative | 3790128 - 3790994 | 32790.1 |
| doxx family membrane protein | H9N25_15500 | Q8DBX8 | Negative | 3791076 - 3792445 | 50299.6 |
| porphobilinogen synthase | H9N25_15505 | O67876 | Negative | 3792535 - 3793503 | 35968.2 |
| hydroxymethylbilane synthase | H9N25_15510 | C6BYB7 | Negative | 3793702 - 3795282 | 58808.5 |
| glutamyl-trna reductase | H9N25_15515 | B8FLI1 | Negative | 3795674 - 3796900 | 46589.4 |
| alpha/beta hydrolase | H9N25_15520 | Not Available | Positive | 3797512 - 3798339 | 30515.3 |
| hypothetical protein | H9N25_15525 | Not Available | Positive | 3798367 - 3798900 | 20473.2 |
| mechanosensitive ion channel | H9N25_15530 | P0AAT4 | Negative | 3798912 - 3800186 | 48576.4 |
| doxx family membrane protein | H9N25_15535 | Q04UL2 | Negative | 3800388 - 3802366 | 72324.2 |
| rdd family protein | H9N25_15540 | P42108 | Negative | 3802737 - 3803351 | 23116.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

