Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_15445 | Not Available | Positive | 3782251 - 3782535 | 11048.3 |
| pin domain-containing protein | H9N25_15450 | O66399 | Positive | 3782525 - 3782941 | 15936.5 |
| outer membrane beta-barrel protein | H9N25_15455 | Not Available | Negative | 3783004 - 3783786 | 29506.1 |
| hypothetical protein | H9N25_15460 | Not Available | Negative | 3783899 - 3784654 | 27936.8 |
| rna polymerase sigma factor | H9N25_15465 | A0R2D4 | Negative | 3784635 - 3785204 | 21695.4 |
| hypothetical protein | H9N25_15470 | Not Available | Negative | 3785583 - 3786740 | 44610.1 |
| copd family protein | H9N25_15475 | P72793 | Negative | 3786929 - 3787489 | 21584.4 |
| uroporphyrinogen decarboxylase | H9N25_15480 | Q6MB12 | Negative | 3787673 - 3788698 | 38322.6 |
| hypothetical protein | H9N25_15485 | Not Available | Negative | 3788900 - 3789415 | 19724.1 |
| response regulator transcription factor | H9N25_15490 | P13792 | Negative | 3789415 - 3790119 | 27282.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

