Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pig-l family deacetylase | H9N25_01505 | Not Available | Positive | 396467 - 398935 | 91677.0 |
| sodium:solute symporter | H9N25_01510 | Q5E733 | Positive | 399036 - 400730 | 62602.1 |
| class i sam-dependent methyltransferase | H9N25_01515 | Not Available | Positive | 400822 - 401445 | 23826.1 |
| duf2911 domain-containing protein | H9N25_01520 | Not Available | Positive | 401592 - 402110 | 18880.9 |
| hypothetical protein | H9N25_01525 | Not Available | Positive | 402491 - 402682 | 7006.37 |
| nudix domain-containing protein | H9N25_01530 | Q6PEC0 | Positive | 403000 - 403458 | 17119.4 |
| dna alkylation repair protein | H9N25_01535 | O07541 | Negative | 403447 - 404550 | 42123.3 |
| nad(p)-dependent oxidoreductase | H9N25_01540 | F4I907 | Positive | 404708 - 405562 | 30133.8 |
| hypothetical protein | H9N25_01545 | Not Available | Negative | 406022 - 406648 | 23934.8 |
| response regulator | H9N25_01550 | Q9CMY2 | Negative | 407108 - 408172 | 40334.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

