Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| antibiotic biosynthesis monooxygenase | H9N25_15395 | O31484 | Positive | 3773240 - 3773542 | 11550.8 |
| 3-isopropylmalate dehydratase small subunit | H9N25_15400 | Q11NN7 | Positive | 3773664 - 3774248 | 21680.5 |
| atp-binding cassette domain-containing protein | H9N25_15405 | P31060 | Positive | 3774248 - 3775708 | 54824.7 |
| 3-isopropylmalate dehydrogenase | H9N25_15410 | Q30RK2 | Positive | 3775713 - 3776804 | 40260.5 |
| 2-isopropylmalate synthase | H9N25_15415 | A6LDN1 | Positive | 3776815 - 3777975 | 42687.0 |
| threonine ammonia-lyase ilva | H9N25_15420 | Q9KC63 | Positive | 3778198 - 3779448 | 45979.6 |
| cupin domain-containing protein | H9N25_15425 | Q05527 | Positive | 3779564 - 3779923 | 13310.9 |
| duf4230 domain-containing protein | H9N25_15430 | Not Available | Negative | 3779986 - 3780546 | 21167.9 |
| hypothetical protein | H9N25_15435 | Not Available | Positive | 3780681 - 3781094 | 15182.0 |
| abc transporter atp-binding protein | H9N25_15440 | Q2SSS4 | Negative | 3781108 - 3782100 | 37082.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

