Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| branched-chain-amino-acid transaminase | H9N25_15345 | O86428 | Positive | 3762564 - 3763454 | 33245.0 |
| class i sam-dependent methyltransferase | H9N25_15350 | A0QCH0 | Positive | 3763502 - 3764080 | 21347.4 |
| dihydroxy-acid dehydratase | H9N25_15355 | A6GWT7 | Positive | 3764323 - 3766005 | 59593.9 |
| orf6n domain-containing protein | H9N25_15360 | Not Available | Positive | 3766053 - 3766622 | 22008.8 |
| biosynthetic-type acetolactate synthase large subunit | H9N25_15365 | P37251 | Positive | 3766644 - 3768395 | 64042.0 |
| acetolactate synthase small subunit | H9N25_15370 | P37252 | Positive | 3768427 - 3769065 | 24556.4 |
| voc family protein | H9N25_15375 | Not Available | Positive | 3769165 - 3769554 | 15212.0 |
| dinb family protein | H9N25_15380 | Not Available | Positive | 3769573 - 3770037 | 17402.8 |
| ketol-acid reductoisomerase | H9N25_15385 | Q11VZ3 | Positive | 3770141 - 3771622 | 54166.3 |
| 3-isopropylmalate dehydratase large subunit | H9N25_15390 | Q11NN8 | Positive | 3771729 - 3773141 | 50968.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

