Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| para family protein | H9N25_15245 | Q9K5N0 | Negative | 3741853 - 3742656 | 29464.8 |
| nad(p)h-dependent oxidoreductase | H9N25_15250 | D3KVM6 | Positive | 3742837 - 3743358 | 19766.8 |
| pas domain-containing protein | H9N25_15255 | Q9RDT3 | Positive | 3744121 - 3745872 | 66321.1 |
| acyl-coa thioesterase | H9N25_15260 | P0A0Q8 | Negative | 3746028 - 3746504 | 17816.8 |
| glycoside hydrolase family 97 protein | H9N25_15265 | G8JZS4 | Negative | 3746760 - 3748865 | 79080.7 |
| duf2130 domain-containing protein | H9N25_15270 | Not Available | Negative | 3749042 - 3750295 | 48544.2 |
| osmc family protein | H9N25_15275 | Not Available | Negative | 3750401 - 3750781 | 13824.8 |
| ytxh domain-containing protein | H9N25_15280 | Not Available | Positive | 3750960 - 3751325 | 13155.8 |
| ydcf family protein | H9N25_15285 | P44292 | Positive | 3751408 - 3752154 | 28185.0 |
| gtpase obge | H9N25_15290 | Q11Z03 | Negative | 3752489 - 3753484 | 35797.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

