Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ldh family oxidoreductase | H9N25_15195 | Q9V0D5 | Positive | 3725822 - 3726907 | 39049.7 |
| glycoside hydrolase family 3 c-terminal domain-containing protein | H9N25_15200 | T2KMH0 | Negative | 3727185 - 3729857 | 99151.2 |
| alpha-l-fucosidase | H9N25_15205 | Q5RFI5 | Negative | 3729860 - 3731281 | 54636.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | H9N25_15210 | Not Available | Negative | 3731338 - 3732930 | 58751.6 |
| susc/raga family tonb-linked outer membrane protein | H9N25_15215 | T2KPJ3 | Negative | 3732950 - 3736216 | 119484.0 |
| rok family protein | H9N25_15220 | Q44406 | Negative | 3736321 - 3737511 | 43077.4 |
| signal peptidase i | H9N25_15225 | P00803 | Negative | 3737660 - 3739192 | 58354.7 |
| 4-hydroxy-tetrahydrodipicolinate reductase | H9N25_15230 | A0LZI4 | Negative | 3739217 - 3739951 | 27183.3 |
| hypothetical protein | H9N25_15235 | Not Available | Negative | 3740212 - 3740937 | 26978.8 |
| parb/repb/spo0j family partition protein | H9N25_15240 | Q83AH2 | Negative | 3740937 - 3741845 | 34007.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

