Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| septal ring lytic transglycosylase rlpa family protein | H9N25_15095 | Q57092 | Negative | 3702872 - 3703252 | 14134.2 |
| arylsulfatase | H9N25_15100 | Q9C0V7 | Negative | 3703448 - 3704995 | 58120.6 |
| methionine-r-sulfoxide reductase | H9N25_15105 | Q9C5C8 | Negative | 3705174 - 3705677 | 18565.2 |
| succinate--coa ligase subunit alpha | H9N25_15110 | Q5HPU4 | Negative | 3706464 - 3707336 | 29928.6 |
| cupin domain-containing protein | H9N25_15115 | Q9X113 | Positive | 3707962 - 3708390 | 15408.6 |
| vit family protein | H9N25_15120 | Q9P6J2 | Positive | 3708526 - 3709215 | 24050.4 |
| 23s rrna (adenine(1618)-n(6))-methyltransferase rlmf | H9N25_15125 | A8GBT4 | Negative | 3709360 - 3710325 | 36594.5 |
| c4-dicarboxylate transporter dcta | H9N25_15130 | P96603 | Negative | 3710566 - 3711852 | 46179.2 |
| isoaspartyl peptidase/l-asparaginase | H9N25_15135 | Q54WW4 | Negative | 3711939 - 3712964 | 36304.0 |
| abc transporter atp-binding protein | H9N25_15140 | O31708 | Negative | 3713021 - 3714790 | 66635.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

