Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_15045 | Not Available | Negative | 3689149 - 3691233 | 77615.5 |
| l,d-transpeptidase family protein | H9N25_15050 | P0AAA0 | Positive | 3691438 - 3692172 | 27549.1 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | H9N25_15055 | P51831 | Negative | 3692331 - 3693074 | 26417.9 |
| giy-yig nuclease family protein | H9N25_15060 | A8F902 | Negative | 3693124 - 3693423 | 11997.1 |
| agmatine deiminase family protein | H9N25_15065 | B8ZP26 | Negative | 3693560 - 3694636 | 40617.9 |
| carbon-nitrogen hydrolase | H9N25_15070 | Q93XI4 | Negative | 3694726 - 3695601 | 32955.9 |
| flotillin family protein | H9N25_15075 | Not Available | Negative | 3695935 - 3697902 | 71620.5 |
| cysteine-rich cwc family protein | H9N25_15080 | Not Available | Negative | 3698507 - 3698728 | 8306.03 |
| ribonucleoside-diphosphate reductase subunit alpha | H9N25_15085 | P36602 | Negative | 3698904 - 3701288 | 89460.7 |
| ribonucleotide-diphosphate reductase subunit beta | H9N25_15090 | Q9LSD0 | Negative | 3701445 - 3702416 | 37334.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

