Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate-semialdehyde dehydrogenase | H9N25_14995 | O67716 | Positive | 3679440 - 3680429 | 36274.1 |
| cdp-alcohol phosphatidyltransferase family protein | H9N25_15000 | Not Available | Positive | 3680498 - 3681100 | 22954.7 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | H9N25_15005 | P39844 | Positive | 3681214 - 3682623 | 50947.9 |
| hypothetical protein | H9N25_15010 | Not Available | Negative | 3682828 - 3683958 | 43832.2 |
| abc transporter atp-binding protein | H9N25_15015 | P0C0E3 | Negative | 3683958 - 3684590 | 23614.9 |
| gnat family n-acetyltransferase | H9N25_15020 | O34569 | Positive | 3684665 - 3685174 | 19431.4 |
| duf2911 domain-containing protein | H9N25_15025 | Not Available | Positive | 3685248 - 3686096 | 31319.8 |
| phosphopyruvate hydratase | H9N25_15030 | A5FN12 | Positive | 3686504 - 3687799 | 46248.6 |
| septum formation initiator family protein | H9N25_15035 | Not Available | Positive | 3687969 - 3688268 | 12177.6 |
| trimeric intracellular cation channel family protein | H9N25_15040 | P0AGM3 | Positive | 3688356 - 3688970 | 22513.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

