Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gmc family oxidoreductase | H9N25_14945 | Q3YAT3 | Positive | 3668281 - 3669981 | 64256.2 |
| gfo/idh/moca family oxidoreductase | H9N25_14950 | P55480 | Positive | 3670066 - 3671223 | 42107.6 |
| sugar phosphate isomerase/epimerase | H9N25_14955 | Q88S37 | Positive | 3671233 - 3672285 | 39450.4 |
| c-type cytochrome | H9N25_14960 | P15452 | Positive | 3672380 - 3672763 | 13813.2 |
| gfo/idh/moca family oxidoreductase | H9N25_14965 | Q6M0B9 | Positive | 3672796 - 3674253 | 54361.7 |
| duf1080 domain-containing protein | H9N25_14970 | Not Available | Positive | 3674362 - 3675042 | 25290.1 |
| nucleoside permease | H9N25_14975 | P76417 | Positive | 3675142 - 3676383 | 45649.5 |
| doxx family membrane protein | H9N25_14980 | Not Available | Positive | 3676385 - 3677274 | 31899.1 |
| sugar phosphate isomerase/epimerase | H9N25_14985 | Q0TUZ0 | Positive | 3677283 - 3678158 | 32313.0 |
| sugar phosphate isomerase/epimerase | H9N25_14990 | Q0TUZ0 | Positive | 3678165 - 3679034 | 32136.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

