Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | H9N25_01455 | T2KPJ3 | Positive | 381313 - 384444 | 114215.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01460 | T2KN63 | Positive | 384471 - 386027 | 57267.7 |
| phosphoheptose isomerase | H9N25_01465 | P26340 | Positive | 386400 - 386897 | 18929.1 |
| acyl-coa desaturase | H9N25_01470 | P0DOW3 | Positive | 387039 - 387767 | 29273.7 |
| tonb-dependent receptor | H9N25_01475 | Not Available | Positive | 388172 - 390577 | 87830.8 |
| abc transporter substrate-binding protein | H9N25_01480 | P26906 | Negative | 390631 - 392265 | 62451.2 |
| hypothetical protein | H9N25_01485 | Not Available | Positive | 392312 - 392764 | 17032.5 |
| sigma-54-dependent fis family transcriptional regulator | H9N25_01490 | Q06065 | Negative | 393026 - 394363 | 49401.8 |
| n-acetyltransferase | H9N25_01495 | Not Available | Positive | 394649 - 395260 | 22233.7 |
| m20/m25/m40 family metallo-hydrolase | H9N25_01500 | B0BTF3 | Positive | 395270 - 396373 | 40614.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

