Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| discoidin domain-containing protein | H9N25_14895 | Q8QFX6 | Positive | 3654537 - 3656291 | 66850.6 |
| beta-glucosidase bglx | H9N25_14900 | P33363 | Positive | 3656319 - 3658616 | 83397.2 |
| dienelactone hydrolase family protein | H9N25_14905 | B8YG19 | Positive | 3658684 - 3659463 | 29593.9 |
| yebc/pmpr family dna-binding transcriptional regulator | H9N25_14910 | A6GXW2 | Negative | 3659674 - 3660402 | 27235.1 |
| nad-dependent epimerase/dehydratase family protein | H9N25_14915 | Q4L3L8 | Negative | 3660478 - 3661422 | 35484.2 |
| sigma-70 family rna polymerase sigma factor | H9N25_14920 | Not Available | Positive | 3661624 - 3662184 | 21850.2 |
| fecr family protein | H9N25_14925 | Not Available | Positive | 3662291 - 3663313 | 38390.9 |
| tonb-dependent receptor | H9N25_14930 | T2KPJ3 | Positive | 3663507 - 3666437 | 107448.0 |
| tim barrel protein | H9N25_14935 | B2V4K2 | Positive | 3666486 - 3667391 | 33395.0 |
| gluconate 2-dehydrogenase subunit 3 family protein | H9N25_14940 | Not Available | Positive | 3667671 - 3668255 | 21543.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

