Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine c-acetyltransferase | H9N25_14845 | P0AB78 | Negative | 3636972 - 3638159 | 43401.3 |
| carboxypeptidase-like regulatory domain-containing protein | H9N25_14850 | Q8A1G1 | Positive | 3638408 - 3640855 | 93740.5 |
| rhodanese-related sulfurtransferase | H9N25_14855 | Q11RM1 | Positive | 3640993 - 3641928 | 35046.8 |
| transcriptional regulator | H9N25_14860 | Not Available | Positive | 3642347 - 3645226 | 109998.0 |
| tonb-dependent receptor | H9N25_14865 | T2KPJ3 | Positive | 3645591 - 3648605 | 108182.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_14870 | T2KN63 | Positive | 3648611 - 3650101 | 54917.7 |
| lamg domain-containing protein | H9N25_14875 | Not Available | Positive | 3650125 - 3650949 | 29177.4 |
| ig-like domain-containing protein | H9N25_14880 | A6LGF6 | Positive | 3651026 - 3652690 | 60986.9 |
| beta-glucosidase | H9N25_14885 | A6LGF6 | Positive | 3652704 - 3654062 | 51891.3 |
| hypothetical protein | H9N25_14890 | Not Available | Positive | 3654121 - 3654522 | 14172.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

