Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rlua family pseudouridine synthase | H9N25_14795 | Q1RJX7 | Negative | 3627537 - 3628223 | 26061.5 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | H9N25_14800 | Q11Q55 | Negative | 3628327 - 3629142 | 29625.0 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | H9N25_14805 | Q8KGA2 | Positive | 3629421 - 3630533 | 40890.7 |
| abc transporter atp-binding protein | H9N25_14810 | P94440 | Positive | 3630747 - 3631511 | 28479.4 |
| abc transporter permease | H9N25_14815 | Q8T674 | Positive | 3631692 - 3632768 | 39137.9 |
| fic family protein | H9N25_14820 | Q17A75 | Positive | 3632884 - 3633840 | 36604.0 |
| fg-gap repeat protein | H9N25_14825 | Not Available | Positive | 3633895 - 3634578 | 25691.4 |
| helix-turn-helix transcriptional regulator | H9N25_14830 | P40950 | Negative | 3634797 - 3635372 | 22053.6 |
| hypothetical protein | H9N25_14835 | Not Available | Negative | 3635374 - 3635784 | 14599.8 |
| phenylalanine--trna ligase subunit alpha | H9N25_14840 | A6LA92 | Negative | 3635784 - 3636824 | 39454.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

