Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin-dependent thiol peroxidase | H9N25_14745 | Q83CY8 | Positive | 3619205 - 3619669 | 17167.4 |
| transketolase | H9N25_14750 | Q58094 | Positive | 3619727 - 3620572 | 30585.3 |
| transketolase family protein | H9N25_14755 | Q58092 | Positive | 3620700 - 3621656 | 34459.6 |
| sigma-70 family rna polymerase sigma factor | H9N25_14760 | P44790 | Positive | 3621750 - 3622310 | 21960.3 |
| hypothetical protein | H9N25_14765 | Not Available | Positive | 3622344 - 3623000 | 24626.7 |
| hypothetical protein | H9N25_14770 | Not Available | Positive | 3623004 - 3623444 | 17215.1 |
| aspartate aminotransferase family protein | H9N25_14775 | Q58131 | Positive | 3623515 - 3624705 | 43515.0 |
| response regulator transcription factor | H9N25_14780 | Q4L6C6 | Positive | 3624763 - 3625440 | 25996.2 |
| hamp domain-containing histidine kinase | H9N25_14785 | Q49ZT9 | Positive | 3625604 - 3626914 | 50158.7 |
| hypothetical protein | H9N25_14790 | Not Available | Negative | 3627029 - 3627454 | 15328.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

