Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m3 family oligoendopeptidase | H9N25_14695 | O51264 | Positive | 3606774 - 3608477 | 65758.9 |
| mfs transporter | H9N25_14700 | P28246 | Negative | 3608819 - 3610036 | 45189.4 |
| amino acid permease | H9N25_14705 | O07576 | Positive | 3610328 - 3612277 | 70900.9 |
| hypothetical protein | H9N25_14710 | Not Available | Positive | 3612294 - 3612845 | 21685.9 |
| transposase | H9N25_14715 | Not Available | Positive | 3613137 - 3613682 | 21910.5 |
| hypothetical protein | H9N25_14720 | Not Available | Negative | 3613772 - 3613924 | 5489.24 |
| kup/hak/kt family potassium transporter | H9N25_14725 | Q11PK1 | Negative | 3613928 - 3615886 | 73444.2 |
| t9ss type a sorting domain-containing protein | H9N25_14730 | Not Available | Positive | 3616121 - 3616597 | 17412.3 |
| fumarylacetoacetate hydrolase family protein | H9N25_14735 | Q8R0F8 | Positive | 3616673 - 3617284 | 23109.7 |
| m23 family metallopeptidase | H9N25_14740 | P44693 | Positive | 3617288 - 3619021 | 64030.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

