Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| autotransporter domain-containing protein | H9N25_14645 | Not Available | Negative | 3598643 - 3599455 | 30691.4 |
| nad kinase | H9N25_14650 | Q11PL9 | Negative | 3599458 - 3600339 | 32756.3 |
| cbs domain-containing protein | H9N25_14655 | P39066 | Negative | 3600349 - 3601011 | 24568.1 |
| alpha/beta hydrolase | H9N25_14660 | Q9AQM4 | Negative | 3601012 - 3601776 | 29016.4 |
| gatb/yqey domain-containing protein | H9N25_14665 | P54464 | Negative | 3601971 - 3602417 | 16551.2 |
| sdr family oxidoreductase | H9N25_14670 | P69935 | Negative | 3602517 - 3603278 | 27934.7 |
| port family protein | H9N25_14675 | Not Available | Negative | 3603368 - 3604165 | 30532.4 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | H9N25_14680 | Q5LH04 | Negative | 3604162 - 3604893 | 27626.3 |
| yiha family ribosome biogenesis gtp-binding protein | H9N25_14685 | B2RL89 | Positive | 3605056 - 3605679 | 23604.6 |
| ubia family prenyltransferase | H9N25_14690 | Q87KM9 | Positive | 3605831 - 3606688 | 32185.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

