Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| prevent-host-death protein | H9N25_14595 | Not Available | Negative | 3586986 - 3587183 | 7408.29 |
| dcmp deaminase family protein | H9N25_14600 | P00814 | Negative | 3587358 - 3587816 | 16422.5 |
| mfs transporter | H9N25_14605 | Q2YIJ8 | Negative | 3587881 - 3589317 | 51262.5 |
| lyse family transporter | H9N25_14610 | P75693 | Positive | 3589460 - 3590086 | 23108.2 |
| class ii glutamine amidotransferase | H9N25_14615 | Q9L6B8 | Negative | 3590373 - 3592274 | 72465.7 |
| glutamate racemase | H9N25_14620 | C0QQ35 | Negative | 3592849 - 3593667 | 30658.7 |
| omph family outer membrane protein | H9N25_14625 | Q9S340 | Negative | 3593917 - 3594495 | 20484.5 |
| omph family outer membrane protein | H9N25_14630 | Not Available | Negative | 3594559 - 3595089 | 20475.5 |
| doxx family membrane protein | H9N25_14635 | Q9K1H0 | Negative | 3595191 - 3597733 | 94696.8 |
| isoprenyl transferase | H9N25_14640 | Q8A1E0 | Negative | 3597883 - 3598623 | 28258.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

