Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ammonium transporter | H9N25_14545 | O66515 | Negative | 3570883 - 3572289 | 49798.5 |
| tigr01212 family radical sam protein | H9N25_14550 | O35008 | Negative | 3572657 - 3573604 | 36071.2 |
| doxx family membrane protein | H9N25_14555 | Q9UHI5 | Negative | 3574545 - 3575980 | 51013.4 |
| sodium-translocating pyrophosphatase | H9N25_14560 | Q2RIS7 | Positive | 3576282 - 3578528 | 78585.7 |
| amino acid permease | H9N25_14565 | O07576 | Positive | 3578644 - 3580119 | 52401.1 |
| porin | H9N25_14570 | Not Available | Positive | 3580218 - 3581549 | 50441.9 |
| marc family protein | H9N25_14575 | P57524 | Positive | 3581629 - 3582195 | 20551.2 |
| rsmb/nop family class i sam-dependent rna methyltransferase | H9N25_14580 | A6TEU2 | Negative | 3582747 - 3583916 | 44926.9 |
| amino acid abc transporter substrate-binding protein | H9N25_14585 | Not Available | Negative | 3583952 - 3585163 | 45730.2 |
| glutamine-hydrolyzing gmp synthase | H9N25_14590 | Q11WK3 | Negative | 3585285 - 3586814 | 56484.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

