Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_14495 | Not Available | Negative | 3561478 - 3561825 | 13041.5 |
| acylhydrolase | H9N25_14500 | P54451 | Negative | 3562151 - 3562888 | 28147.0 |
| outer membrane beta-barrel protein | H9N25_14505 | Not Available | Negative | 3562949 - 3565639 | 99132.0 |
| duf1456 family protein | H9N25_14510 | P33355 | Negative | 3565623 - 3565856 | 8877.81 |
| dead/deah box helicase | H9N25_14515 | P21693 | Negative | 3565954 - 3567258 | 48636.2 |
| hypothetical protein | H9N25_14520 | Not Available | Negative | 3567309 - 3567527 | 8446.42 |
| hypothetical protein | H9N25_14525 | Not Available | Positive | 3567742 - 3568215 | 17576.2 |
| srpbcc family protein | H9N25_14530 | Not Available | Positive | 3568672 - 3569139 | 18147.8 |
| duf4468 domain-containing protein | H9N25_14535 | Not Available | Negative | 3569150 - 3569728 | 22005.7 |
| porin | H9N25_14540 | O66516 | Negative | 3569821 - 3570846 | 36127.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

