Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cap domain-containing protein | H9N25_14445 | O31398 | Negative | 3544743 - 3545258 | 18383.9 |
| atp-dependent clp protease atp-binding subunit | H9N25_14450 | P37571 | Negative | 3545405 - 3547957 | 94973.7 |
| bluf domain-containing protein | H9N25_14455 | Not Available | Negative | 3548497 - 3548991 | 19103.9 |
| hypothetical protein | H9N25_14460 | Not Available | Negative | 3549422 - 3550660 | 44374.1 |
| duf5013 domain-containing protein | H9N25_14465 | Not Available | Negative | 3550814 - 3552025 | 43877.2 |
| duf4959 domain-containing protein | H9N25_14470 | Not Available | Negative | 3552056 - 3553255 | 44779.4 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_14475 | T2KN63 | Negative | 3553281 - 3555218 | 73946.4 |
| tonb-dependent receptor | H9N25_14480 | T2KM18 | Negative | 3555287 - 3558538 | 119058.0 |
| energy-dependent translational throttle protein etta | H9N25_14485 | P45127 | Positive | 3559268 - 3560947 | 62710.5 |
| hypothetical protein | H9N25_14490 | Not Available | Negative | 3561072 - 3561458 | 14705.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

