Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator | H9N25_01405 | T2KMF4 | Positive | 365031 - 367688 | 100959.0 |
| sigma-70 family rna polymerase sigma factor | H9N25_01410 | Q45585 | Positive | 367834 - 368397 | 21809.5 |
| family 43 glycosylhydrolase | H9N25_01415 | Not Available | Positive | 368553 - 369581 | 39012.8 |
| alginate lyase family protein | H9N25_01420 | Not Available | Positive | 369923 - 371053 | 42401.7 |
| right-handed parallel beta-helix repeat-containing protein | H9N25_01425 | P94576 | Positive | 371389 - 373158 | 64358.5 |
| alginate lyase family protein | H9N25_01430 | Not Available | Positive | 373169 - 374371 | 45444.4 |
| hypothetical protein | H9N25_01435 | Not Available | Positive | 374440 - 376044 | 59579.8 |
| substrate-binding domain-containing protein | H9N25_01440 | Q0I4B4 | Positive | 376071 - 377087 | 38148.0 |
| Tmrna,resume consensus sequence (at 89): tttagttggcgaaaatac | Not Available | Not Available | Positive | 377248 - 377612 | Not Available |
| catalase/peroxidase hpi | H9N25_01450 | A5FD11 | Positive | 378018 - 380294 | 82382.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

