Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voc family protein | H9N25_14345 | Not Available | Positive | 3517842 - 3518177 | 12975.4 |
| methylmalonyl-coa mutase family protein | H9N25_14350 | Q5KUG0 | Positive | 3518308 - 3521703 | 126725.0 |
| pyrroloquinoline quinone biosynthesis protein pqqb | H9N25_14355 | A9W3R2 | Positive | 3521704 - 3522624 | 35147.7 |
| acyl-acp desaturase | H9N25_14360 | Q9LF04 | Negative | 3522818 - 3523798 | 37935.6 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 3524493 - 3524604 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 3524751 - 3527627 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 3528029 - 3528102 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 3528185 - 3528259 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 3528448 - 3529965 | Not Available |
| outer membrane protein assembly factor bamd | H9N25_14390 | Not Available | Positive | 3531034 - 3531969 | 35890.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

