Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | H9N25_14295 | T2KM18 | Positive | 3501700 - 3504756 | 110765.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | H9N25_14300 | Not Available | Positive | 3504768 - 3506381 | 59337.9 |
| hypothetical protein | H9N25_14305 | P04067 | Positive | 3506529 - 3508154 | 57419.3 |
| hypothetical protein | H9N25_14310 | Not Available | Positive | 3508553 - 3510262 | 63561.4 |
| mota/tolq/exbb proton channel family protein | H9N25_14315 | O27101 | Positive | 3510262 - 3510966 | 25578.1 |
| biopolymer transporter exbd | H9N25_14320 | Not Available | Positive | 3510966 - 3511367 | 14860.4 |
| energy transducer tonb | H9N25_14325 | Not Available | Positive | 3511367 - 3512203 | 29333.5 |
| right-handed parallel beta-helix repeat-containing protein | H9N25_14330 | P0DW93 | Negative | 3512268 - 3514331 | 73765.8 |
| bifunctional folylpolyglutamate synthase/dihydrofolate synthase | H9N25_14335 | D4GW05 | Positive | 3514570 - 3515859 | 47242.9 |
| alkaline phosphatase family protein | H9N25_14340 | Q55320 | Positive | 3515927 - 3517585 | 61524.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

