Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2071 domain-containing protein | H9N25_14245 | Not Available | Positive | 3489084 - 3489791 | 26995.4 |
| hypothetical protein | H9N25_14250 | Not Available | Positive | 3489818 - 3490375 | 21291.3 |
| outer membrane beta-barrel protein | H9N25_14255 | Not Available | Negative | 3490481 - 3491977 | 55179.8 |
| sigma-70 family rna polymerase sigma factor | H9N25_14260 | O07582 | Negative | 3491974 - 3492549 | 22248.0 |
| class i sam-dependent methyltransferase | H9N25_14265 | Not Available | Positive | 3492711 - 3493613 | 34872.9 |
| doxx family membrane protein | H9N25_14270 | Not Available | Negative | 3493960 - 3495560 | 59045.2 |
| susc/raga family tonb-linked outer membrane protein | H9N25_14275 | Q8A1G1 | Negative | 3495564 - 3498665 | 113405.0 |
| fecr family protein | H9N25_14280 | Not Available | Negative | 3498698 - 3499711 | 38356.7 |
| rna polymerase sigma-70 factor | H9N25_14285 | O07582 | Negative | 3499758 - 3500399 | 24523.0 |
| rok family protein | H9N25_14290 | Q8Z7H9 | Positive | 3500550 - 3501440 | 32815.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

