Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_14195 | Not Available | Positive | 3477338 - 3477937 | 23264.1 |
| arac family transcriptional regulator | H9N25_14200 | Q51872 | Negative | 3477926 - 3478852 | 35346.6 |
| aldehyde dehydrogenase | H9N25_14205 | Q9RYG9 | Positive | 3479188 - 3480693 | 54947.6 |
| duf779 domain-containing protein | H9N25_14210 | Not Available | Positive | 3480954 - 3481328 | 14435.3 |
| hypothetical protein | H9N25_14215 | Not Available | Positive | 3481483 - 3481689 | 7708.83 |
| duf393 domain-containing protein | H9N25_14220 | P40761 | Negative | 3481686 - 3482087 | 15387.9 |
| bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase pyrr | H9N25_14225 | A9A079 | Positive | 3482351 - 3482899 | 20867.4 |
| aspartate carbamoyltransferase catalytic subunit | H9N25_14230 | A6H0I8 | Positive | 3482902 - 3483831 | 34284.0 |
| tetratricopeptide repeat protein | H9N25_14235 | Not Available | Positive | 3484133 - 3487156 | 115605.0 |
| tonb-dependent receptor | H9N25_14240 | Not Available | Positive | 3487161 - 3488858 | 63087.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

