Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminoacyl-trna hydrolase | H9N25_14145 | P40711 | Negative | 3467101 - 3467511 | 15546.2 |
| (d)cmp kinase | H9N25_14150 | Q8A626 | Positive | 3467586 - 3468266 | 25817.7 |
| duf1080 domain-containing protein | H9N25_14155 | Not Available | Positive | 3468528 - 3469358 | 31163.5 |
| tpm domain-containing protein | H9N25_14160 | P55140 | Positive | 3469419 - 3470057 | 23845.3 |
| hypothetical protein | H9N25_14165 | Not Available | Positive | 3470042 - 3470920 | 32994.6 |
| sh3 domain-containing protein | H9N25_14170 | P26836 | Positive | 3471048 - 3472028 | 36598.1 |
| 30s ribosomal protein s1 | H9N25_14175 | Q9Z8M3 | Positive | 3472478 - 3474412 | 71493.1 |
| beta-n-acetylhexosaminidase | H9N25_14180 | P49008 | Positive | 3474932 - 3476605 | 64128.2 |
| hypothetical protein | H9N25_14185 | Not Available | Positive | 3476670 - 3476849 | 6529.98 |
| rna polymerase sigma factor | H9N25_14190 | O05404 | Positive | 3476860 - 3477336 | 18728.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

