Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa dehydrogenase family protein | H9N25_14045 | Q96329 | Negative | 3446522 - 3447883 | 50486.3 |
| ytxh domain-containing protein | H9N25_14050 | Not Available | Positive | 3448021 - 3448395 | 13801.6 |
| bacillithiol biosynthesis deacetylase bshb1 | H9N25_14055 | Q81ST8 | Negative | 3448507 - 3449223 | 26805.2 |
| glutathione peroxidase | H9N25_14060 | Q9Z9N7 | Negative | 3449232 - 3449744 | 19586.6 |
| duf4294 domain-containing protein | H9N25_14065 | Not Available | Negative | 3449751 - 3450365 | 23610.8 |
| bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | H9N25_14070 | O54408 | Positive | 3450475 - 3452682 | 83611.1 |
| transcriptional repressor | H9N25_14075 | Q46463 | Positive | 3452846 - 3453343 | 19371.3 |
| adenylosuccinate synthase | H9N25_14080 | A0LZF7 | Positive | 3453381 - 3454661 | 46753.2 |
| hypothetical protein | H9N25_14085 | Not Available | Negative | 3454875 - 3455303 | 16336.2 |
| anthranilate synthase component i family protein | H9N25_14090 | P05041 | Positive | 3455374 - 3456630 | 47329.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

