Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_13995 | P9WGL4 | Positive | 3429967 - 3432321 | 90380.1 |
| sigma 54-interacting transcriptional regulator | H9N25_14000 | P71229 | Positive | 3432328 - 3434241 | 71669.2 |
| sigma 54-interacting transcriptional regulator | H9N25_14005 | P71229 | Positive | 3434418 - 3436370 | 73992.8 |
| na+/h+ antiporter | H9N25_14010 | A8FHE3 | Negative | 3436402 - 3438024 | 60227.1 |
| alpha/beta hydrolase | H9N25_14015 | P49323 | Positive | 3438508 - 3439326 | 30270.9 |
| alpha-l-fucosidase | H9N25_14020 | Q8GW72 | Negative | 3439692 - 3441101 | 52898.2 |
| hamp domain-containing histidine kinase | H9N25_14025 | Q08408 | Positive | 3441338 - 3442771 | 54647.1 |
| response regulator transcription factor | H9N25_14030 | Q9AE24 | Positive | 3442785 - 3443489 | 26665.3 |
| l-lysine 6-transaminase | H9N25_14035 | P63510 | Positive | 3444086 - 3445417 | 50009.0 |
| hypothetical protein | H9N25_14040 | Not Available | Positive | 3445420 - 3445821 | 15376.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

