Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ring-cleaving dioxygenase | H9N25_13945 | P96693 | Negative | 3418136 - 3419071 | 35064.5 |
| sensor histidine kinase | H9N25_13950 | P9WGL4 | Negative | 3419077 - 3421380 | 87647.5 |
| duf1275 domain-containing protein | H9N25_13955 | Not Available | Negative | 3421383 - 3422072 | 25075.3 |
| dna starvation/stationary phase protection protein | H9N25_13960 | P0A3A8 | Negative | 3422086 - 3422559 | 17992.3 |
| doxx family protein | H9N25_13965 | P44270 | Negative | 3422582 - 3423016 | 16353.2 |
| amidohydrolase | H9N25_13970 | O34355 | Negative | 3423020 - 3424912 | 70653.1 |
| peptidase m17 | H9N25_13975 | A7NG41 | Negative | 3424940 - 3425680 | 26151.8 |
| alginate export family protein | H9N25_13980 | Not Available | Negative | 3425692 - 3427071 | 52365.5 |
| hydrolase | H9N25_13985 | P21367 | Negative | 3427088 - 3427720 | 22962.6 |
| sigma 54-interacting transcriptional regulator | H9N25_13990 | P19323 | Positive | 3428269 - 3429960 | 63879.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

