Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | H9N25_01355 | T2KPJ3 | Positive | 349126 - 352284 | 116406.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01360 | T2KN63 | Positive | 352296 - 354047 | 64636.6 |
| susc/raga family tonb-linked outer membrane protein | H9N25_01365 | T2KM18 | Positive | 354160 - 355830 | 61290.8 |
| susc/raga family tonb-linked outer membrane protein | H9N25_01370 | T2KPJ3 | Positive | 355815 - 357152 | 49763.5 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01375 | T2KN63 | Positive | 357170 - 359023 | 68331.9 |
| chrd domain-containing protein | H9N25_01380 | Not Available | Positive | 359049 - 359546 | 17328.9 |
| hypothetical protein | H9N25_01385 | Not Available | Positive | 359815 - 359988 | 6912.13 |
| glycoside hydrolase family 97 n-terminal domain-containing protein | H9N25_01390 | G8JZS4 | Positive | 360107 - 362005 | 72858.7 |
| doxx family membrane protein | H9N25_01395 | Not Available | Positive | 362034 - 363265 | 44756.2 |
| hypothetical protein | H9N25_01400 | T2KMF4 | Positive | 363538 - 365034 | 55551.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

